ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5cb5B1 - ECOD Domain | ECOD

ECOD/Domains/e5cb5B1

e5cb5B1

UID: 001700080

PDB

Range: B:2-173
PDB: 5CB5 chain B(all domains)
UniProt: P0A8D6 (all domains)
Gene: ymdB

Molecule: O-acetyl-ADP-ribose deacetylase

3D Structure

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Related Domains

Browse other domains in Macro →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMacro domain-like(7529)

HH-groupMacro domain-like(7529.1)

TT-groupMacro domain-like(7529.1.1)

FFamilyMacro(7529.1.1.1)

Ligands

in contact, ≤ 4 Å

ADENOSINE-5-DIPHOSPHORIBOSEAPR

+ 2 additives (Acetate, Sulfate ion)

AcetateACT
DrugBank DB14511
Sulfate ionSO4

Pfam Families

Macro domain

ClanCL0223MACRO

External Links

ECOD PDB View: 5CB5 RCSB PDB: 5CB5 PDBe: 5CB5 UniProt: P0A8D6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.