ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5cb5M1 - ECOD Domain | ECOD

ECOD/Domains/e5cb5M1

e5cb5M1

UID: 001700091

PDB

Range: M:2-174
PDB: 5CB5 chain M(all domains)
UniProt: P0A8D6 (all domains)
Gene: ymdB

Molecule: O-acetyl-ADP-ribose deacetylase

3D Structure

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Related Domains

Browse other domains in Macro →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMacro domain-like(7529)

HH-groupMacro domain-like(7529.1)

TT-groupMacro domain-like(7529.1.1)

FFamilyMacro(7529.1.1.1)

Ligands

in contact, ≤ 4 Å

[(2R,3R,4R,5R)-5-[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-2,4-bis(oxidanyl)oxolan-3-yl] ethanoateZOD

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Pfam Families

Macro domain

ClanCL0223MACRO

External Links

ECOD PDB View: 5CB5 RCSB PDB: 5CB5 PDBe: 5CB5 UniProt: P0A8D6

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.