ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5e3pA2 - ECOD Domain | ECOD

ECOD/Domains/e5e3pA2

e5e3pA2

UID: 001700244

PDB

Range: A:131-285
PDB: 5E3P chain A(all domains)
UniProt: Q8NRE3 (all domains)
Gene: dapD

Molecule: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

3D Structure

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Related Domains

Browse other domains in Hexapep_2 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded left-handed beta-helix(208)

HH-groupTrimeric LpxA-like enzymes(208.1)

TT-groupTrimeric LpxA-like enzymes(208.1.1)

FFamilyHexapep_2(208.1.1.6)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Sulfate ion, Tetraethylene glycol)

Sulfate ionSO4
DrugBank DB14546
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF14602Hexapep_2

Hexapeptide repeat of succinyl-transferase

ClanCL0536HEXAPEP

External Links

ECOD PDB View: 5E3P RCSB PDB: 5E3P PDBe: 5E3P UniProt: Q8NRE3

Downloads

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