ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3bk2A2 - ECOD Domain | ECOD

ECOD/Domains/e3bk2A2

e3bk2A2

UID: 001710392

PDB

Range: A:7-209,A:375-458
PDB: 3BK2 chain A(all domains)
UniProt: Q72JJ7 (all domains)
Gene: rnj

Molecule: Metal dependent hydrolase

3D Structure

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Related Domains

Browse other domains in RMMBL,Lactamase_B_2 →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyRMMBL,Lactamase_B_2(247.1.1.18)

Ligands

in contact, ≤ 4 Å

Uridine monophosphateU5P
drugDrugBank DB03685
Zinc ionZN
metal

+ 2 additives (Glycerin, Sulfate ion)

Pfam Families

Zn-dependent metallo-hydrolase RNA specificity domain

ClanCL0398RMMBL_DRMBL

PF12706Lactamase_B_2

Beta-lactamase superfamily domain

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 3BK2 RCSB PDB: 3BK2 PDBe: 3BK2 UniProt: Q72JJ7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.