ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4v8sAW2 - ECOD Domain | ECOD

ECOD/Domains/e4v8sAW2

e4v8sAW2

UID: 001711488

PDB

Range: AW:495-644
PDB: 4V8S chain AW(all domains)
UniProt: B8YB53 (all domains)
Gene: rpo1N

Molecule: DNA-DIRECTED RNA POLYMERASE

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_3 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupfirst helical domain in RNA-polymerase beta-prime subunit(4959)

HH-groupfirst helical domain in RNA-polymerase beta-prime subunit(4959.1)

TT-groupfirst helical domain in RNA-polymerase beta-prime subunit(4959.1.1)

FFamilyRNA_pol_Rpb1_3(4959.1.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04983RNA_pol_Rpb1_3

RNA polymerase Rpb1, domain 3

External Links

ECOD PDB View: 4V8S RCSB PDB: 4V8S PDBe: 4V8S UniProt: B8YB53

Downloads

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