ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4v8sBA4 - ECOD Domain | ECOD

ECOD/Domains/e4v8sBA4

e4v8sBA4

UID: 001711494

PDB

Range: BA:307-494
PDB: 4V8S chain BA(all domains)
UniProt: B8YB53 (all domains)
Gene: rpo1N

Molecule: DNA-DIRECTED RNA POLYMERASE

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyRNA_pol_Rpb1_2(1.1.2.2)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00623RNA_pol_Rpb1_2

RNA polymerase Rpb1, domain 2

External Links

ECOD PDB View: 4V8S RCSB PDB: 4V8S PDBe: 4V8S UniProt: B8YB53

Downloads

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