ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4yu5A1 - ECOD Domain | ECOD

ECOD/Domains/e4yu5A1

e4yu5A1

UID: 001713336

PDB

Range: A:50-94,A:144-438
PDB: 4YU5 chain A(all domains)
UniProt: D8H130 (all domains)

Molecule: Immune inhibitor A, metalloprotease

3D Structure

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Related Domains

Browse other domains in Peptidase_M6 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M6(2498.1.1.25)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
3-(1-methylpiperidinium-1-yl)propane-1-sulfonateKH2
Zinc ionZN
metal

Pfam Families

PF05547Peptidase_M6

Immune inhibitor A peptidase M6, catalytic domain

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 4YU5 RCSB PDB: 4YU5 PDBe: 4YU5 UniProt: D8H130

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.