ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4pklA1 - ECOD Domain | ECOD

ECOD/Domains/e4pklA1

e4pklA1

UID: 001713440

PDB

Range: A:5-114
PDB: 4PKL chain A(all domains)
UniProt: Q38AM1 (all domains)
Gene: Tb10.6k15.3240

Molecule: Bromodomain factor 2

3D Structure

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Related Domains

Browse other domains in Bromodomain →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBromodomain-like(633)

HH-groupBromodomain(633.1)

TT-groupBromodomain(633.1.1)

FFamilyBromodomain(633.1.1.1)

Ligands

in contact, ≤ 4 Å

7-(3,5-DIMETHYL-1,2-OXAZOL-4-YL)-8-METHOXY-1-[(1R)-1-(PYRIDIN-2-YL)ETHYL]-1H,2H,3H-IMIDAZO[4,5-C]QUINOLIN-2-ONE1GH
Chloride ionCL
Potassium ionK

Pfam Families

PF00439Bromodomain

Bromodomain

External Links

ECOD PDB View: 4PKL RCSB PDB: 4PKL PDBe: 4PKL UniProt: Q38AM1

Downloads

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metal

+ 2 additives (Glycerin, Phosphate ion)

GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.