ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ru5C1 - ECOD Domain | ECOD

ECOD/Domains/e4ru5C1

e4ru5C1

UID: 001714451

RepresentativePDB

Range: C:145-254,C:342-652
PDB: 4RU5 chain C(all domains)
UniProt: H2BD96 (all domains)

Molecule: tailspike gp27

3D Structure

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Related Domains

Browse other domains in Gp49_Pectate_lyase_like →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyGp49_Pectate_lyase_like(207.2.1.31)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Sodium ionNA
metal

+ 2 additives (Acetate ion, 1,2-ETHANEDIOL)

Acetate ionACT
1,2-ETHANEDIOL

Pfam Families

PF22442Gp49_Pectate_lyase_like

Gp49, pectin lyase-like

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 4RU5 RCSB PDB: 4RU5 PDBe: 4RU5 UniProt: H2BD96

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.