ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d6pA1 - ECOD Domain | ECOD

ECOD/Domains/e5d6pA1

e5d6pA1

UID: 001714904

PDB

Range: A:16-230
PDB: 5D6P chain A(all domains)
UniProt: P0A0K8 (all domains)
Gene: gyrB

Molecule: DNA gyrase subunit B

3D Structure

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Related Domains

Browse other domains in HATPase_c →

Classification

AArchitecturea+b two layers(a.11)

XX-groupATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like(225)

HH-groupATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase(225.1)

TT-groupATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase(225.1.1)

FFamilyHATPase_c(225.1.1.3)

Ligands

in contact, ≤ 4 Å

1-ethyl-3-[4-(hydroxymethyl)-5-(1H-pyrrol-2-yl)-1,3-thiazol-2-yl]urea57U

+ 2 additives (Glycerin, (4r)-2-Methylpentane-2,4-Diol)

GlycerinGOL
DrugBank DB09462
(4r)-2-Methylpentane-2,4-Diol

Pfam Families

PF02518HATPase_c

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

ClanCL0025His_Kinase_A

External Links

ECOD PDB View: 5D6P RCSB PDB: 5D6P PDBe: 5D6P UniProt: P0A0K8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.