ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d6qB1 - ECOD Domain | ECOD

ECOD/Domains/e5d6qB1

e5d6qB1

UID: 001714907

PDB

Range: B:20-231
PDB: 5D6Q chain B(all domains)
UniProt: P0A0K8 (all domains)
Gene: gyrB

Molecule: DNA gyrase subunit B

3D Structure

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Related Domains

Browse other domains in HATPase_c →

Classification

AArchitecturea+b two layers(a.11)

XX-groupATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like(225)

HH-groupATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase(225.1)

TT-groupATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase(225.1.1)

FFamilyHATPase_c(225.1.1.3)

Ligands

in contact, ≤ 4 Å

1-ethyl-3-{4-[(E)-2-(pyridin-3-yl)ethenyl]-5-(1H-pyrrol-2-yl)-1,3-thiazol-2-yl}urea57V
Magnesium ionMG
metal

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-Diol

Pfam Families

PF02518HATPase_c

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

ClanCL0025His_Kinase_A

External Links

ECOD PDB View: 5D6Q RCSB PDB: 5D6Q PDBe: 5D6Q UniProt: P0A0K8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.