ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5dyfA1 - ECOD Domain | ECOD

ECOD/Domains/e5dyfA1

e5dyfA1

UID: 001715025

PDB

Range: A:3-189
PDB: 5DYF chain A(all domains)
UniProt: Q9JYV4 (all domains)
Gene: pepN

Molecule: Aminopeptidase N

3D Structure

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Related Domains

Browse other domains in Peptidase_M1_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupBaculovirus p35 protein-related(4081)

HH-groupBaculovirus p35 protein-related(4081.1)

TT-groupBaculovirus p35 protein-related(4081.1.1)

FFamilyPeptidase_M1_N(4081.1.1.5)

Ligands

in contact, ≤ 4 Å

[(1R)-1-amino-2-(benzylamino)ethyl]phosphonic acid5HR

+ 2 additives (Glycerin, Imidazole)

GlycerinGOL
DrugBank DB09462
ImidazoleIMD

Pfam Families

PF17900Peptidase_M1_N

Peptidase M1 N-terminal domain

ClanCL0672p35

External Links

ECOD PDB View: 5DYF RCSB PDB: 5DYF PDBe: 5DYF UniProt: Q9JYV4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.