ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5fmfI1 - ECOD Domain | ECOD

ECOD/Domains/e5fmfI1

e5fmfI1

UID: 001715216

PDB

Range: I:50-120
PDB: 5FMF chain I(all domains)
UniProt: P27999 (all domains)
Gene: RPB9

Molecule: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9

3D Structure

Loading viewer...

Related Domains

Browse other domains in TFIIS_C →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupRubredoxin-related(375.1.1)

FFamilyTFIIS_C(375.1.1.7)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01096Zn_ribbon_TFIIS

Transcription factor S-II (TFIIS)

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 5FMF RCSB PDB: 5FMF PDBe: 5FMF UniProt: P27999

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure