ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ud1B1 - ECOD Domain | ECOD

ECOD/Domains/e4ud1B1

e4ud1B1

UID: 001715803

PDB

Range: B:31-163
PDB: 4UD1 chain B(all domains)
UniProt: T2B9R0 (all domains)

Molecule: N PROTEIN

3D Structure

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Related Domains

Browse other domains in CoV_nucleocap →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupCoronavirus RNA-binding domain (N-terminal part of Pfam 00937)(704)

HH-groupCoronavirus RNA-binding domain (N-terminal part of Pfam 00937)(704.1)

TT-groupCoronavirus RNA-binding domain (N-terminal part of Pfam 00937)(704.1.1)

FFamilyCoV_nucleocap(704.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Glycerin, Imidazole, Ammonium ion)

GlycerinGOL
DrugBank DB09462
ImidazoleIMD
DrugBank DB03366
Ammonium ion

Pfam Families

PF00937CoV_nucleocap

Coronavirus nucleocapsid

External Links

ECOD PDB View: 4UD1 RCSB PDB: 4UD1 PDBe: 4UD1 UniProt: T2B9R0

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.