ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5eumB1 - ECOD Domain | ECOD

ECOD/Domains/e5eumB1

e5eumB1

UID: 001716095

PDB

Range: B:333-587
PDB: 5EUM chain B(all domains)
UniProt: A0A0E1SLC7 (all domains)

Molecule: Lipid A export ATP-binding/permease protein MsbA

3D Structure

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Related Domains

Browse other domains in ABC_tran →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyABC_tran(2004.1.1.5)

Ligands

in contact, ≤ 4 Å

Succinic acidSIN
drugDrugBank DB00139
Chloride ionCL

+ 3 additives (Acetate, Malonate Ion, Sulfate ion)

AcetateACT

Pfam Families

PF00005ABC_tran

ABC transporter

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5EUM RCSB PDB: 5EUM PDBe: 5EUM UniProt: A0A0E1SLC7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

Malonate IonMLI

DrugBank DB02201

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.