ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rpuA3 - ECOD Domain | ECOD

ECOD/Domains/e4rpuA3

e4rpuA3

UID: 001716781

PDB

Range: A:822-1037
PDB: 4RPU chain A(all domains)
UniProt: Q5JRX3 (all domains)
Gene: PITRM1

Molecule: Presequence protease, mitochondrial

3D Structure

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Related Domains

Browse other domains in PreP_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupLuxS, MPP, ThrRS/AlaRS common domain(309)

HH-groupLuxS, MPP, ThrRS/AlaRS common domain(309.1)

TT-groupLuxS/MPP-like metallohydrolase(309.1.1)

FFamilyPreP_C(309.1.1.12)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metalwithin 5 Å only

+ 2 additives (Acetate, Glycerol)

AcetateACT
DrugBank DB14511
Glycerol

Pfam Families

PreP C-terminal domain

ClanCL0094Peptidase_ME

External Links

ECOD PDB View: 4RPU RCSB PDB: 4RPU PDBe: 4RPU UniProt: Q5JRX3

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.