ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ez3D3 - ECOD Domain | ECOD

ECOD/Domains/e5ez3D3

e5ez3D3

UID: 001717149

PDB

Range: D:12-185
PDB: 5EZ3 chain D(all domains)
UniProt: Q8YC61 (all domains)
Gene: BMEII0671

Molecule: Acyl-CoA dehydrogenase

3D Structure

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Related Domains

Browse other domains in AidB_N →

Classification

AArchitecturealpha arrays(a.6)

XX-groupAcyl-CoA dehydrogenase N-terminal domain-like(4033)

HH-groupAcyl-CoA dehydrogenase N-terminal domain-like(4033.1)

TT-groupAcyl-CoA dehydrogenase N-terminal domain-like(4033.1.1)

FFamilyAidB_N(4033.1.1.6)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147within 5 Å only
(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Cacodylate ion)

Pfam Families

Adaptive response protein AidB N-terminal domain

ClanCL0544AcylCoA_ox_dh_N

External Links

ECOD PDB View: 5EZ3 RCSB PDB: 5EZ3 PDBe: 5EZ3 UniProt: Q8YC61

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4r)-2-Methylpentane-2,4-Diol

DrugBank DB03564

Cacodylate ionCAC

Shown in the structure viewer. Drug annotations from DrugDomain.