ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3m8dA1 - ECOD Domain | ECOD

ECOD/Domains/e3m8dA1

e3m8dA1

UID: 001717874

PDB

Range: A:7-133
PDB: 3M8D chain A(all domains)
UniProt: P06129 (all domains)
Gene: btuB

Molecule: Vitamin B12 transporter btuB

3D Structure

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Related Domains

Browse other domains in Plug →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupN0 domain in phage tail proteins and secretins-like(3070)

HH-groupTonB-dependent receptor plug domain(3070.2)

TT-groupTonB-dependent receptor plug domain(3070.2.1)

FFamilyPlug(3070.2.1.1)

Ligands

in contact, ≤ 4 Å

CyanocobalaminCNC
drugDrugBank DB00115
S-[(1-Hydroxy-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioateMTN
drugDrugBank DB08217

Pfam Families

TonB-dependent Receptor Plug Domain

External Links

ECOD PDB View: 3M8D RCSB PDB: 3M8D PDBe: 3M8D UniProt: P06129

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.