ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5cdoT2 - ECOD Domain | ECOD

ECOD/Domains/e5cdoT2

e5cdoT2

UID: 001719216

PDB

Range: T:31-161
PDB: 5CDO chain T(all domains)
UniProt: Q99XG5 (all domains)
Gene: gyrA

Molecule: DNA gyrase subunit A

3D Structure

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Related Domains

Browse other domains in DNA_topoisoIV →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupwinged helix domain(101.1.2)

FFamilyDNA_topoisoIV(101.1.2.9)

Ligands

in contact, ≤ 4 Å

(2R,4S,4aS,5R)-6'-hydroxy-2,4-dimethyl-8-nitro-1,2,4,4a-tetrahydro-2'H,6H-spiro[1,4-oxazino[4,3-a]quinoline-5,5'-pyrimidine]-2',4'(3'H)-dione50M
(2R,4S,4aS)-4',6'-dihydroxy-2,4-dimethyl-8-nitro-1,2,4,4a-tetrahydro-2'H,6H-spiro[1,4-oxazino[4,3-a]quinoline-5,5'-pyrimidin]-2'-one53M

+ 1 additive (Sulfate ion)

Pfam Families

PF00521DNA_topoisoIV

DNA gyrase/topoisomerase IV, subunit A

External Links

ECOD PDB View: 5CDO RCSB PDB: 5CDO PDBe: 5CDO UniProt: Q99XG5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.