ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4yzaA1 - ECOD Domain | ECOD

ECOD/Domains/e4yzaA1

e4yzaA1

UID: 001720415

PDB

Range: A:1-193
PDB: 4YZA chain A(all domains)
UniProt: B9MKT4 (all domains)
Gene: Athe_1854

Molecule: Pectate lyase

3D Structure

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Related Domains

Browse other domains in Pectate_lyase →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyPectate_lyase(207.2.1.9)

Ligands

in contact, ≤ 4 Å

alpha-D-galacturonic acidADA
drugDrugBank DB03511
beta-D-Galactopyranuronic acidGTR
drugDrugBank DB03652

Pfam Families

PF03211Pectate_lyase

Pectate lyase

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 4YZA RCSB PDB: 4YZA PDBe: 4YZA UniProt: B9MKT4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Calcium ionCA

metal

(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 2 additives (Imidazole, (4r)-2-Methylpentane-2,4-Diol)

ImidazoleIMD
DrugBank DB03366
(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.