ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5a87B1 - ECOD Domain | ECOD

ECOD/Domains/e5a87B1

e5a87B1

UID: 001720479

PDB

Range: B:28-262
PDB: 5A87 chain B(all domains)
UniProt: Q8GKX2 (all domains)
Gene: blaVIM-5

Molecule: METALLO-BETA-LACTAMASE VIM-5

3D Structure

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Related Domains

Browse other domains in Lactamase_B →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B(247.1.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 5A87 RCSB PDB: 5A87 PDBe: 5A87 UniProt: Q8GKX2

Downloads

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