ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5eegB2 - ECOD Domain | ECOD

ECOD/Domains/e5eegB2

e5eegB2

UID: 001720634

PDB

Range: B:100-352
PDB: 5EEG chain B(all domains)
UniProt: Q06528 (all domains)
Gene: dnrK

Molecule: Carminomycin 4-O-methyltransferase DnrK

3D Structure

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Related Domains

Browse other domains in Methyltransf_2, Methyltransf_25 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_2, Methyltransf_25(2003.1.5.163)

Ligands

in contact, ≤ 4 Å

(2~{R},3~{R},4~{S},5~{S})-2-(6-aminopurin-9-yl)-5-[[(3~{S})-3-azanyl-3-(1~{H}-1,2,3,4-tetrazol-5-yl)propyl]sulfanylmethyl]oxolane-3,4-diolS8M

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00891Methyltransf_2

O-methyltransferase domain

ClanCL0063NADP_Rossmann

PF13649Methyltransf_25

Methyltransferase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5EEG RCSB PDB: 5EEG PDBe: 5EEG UniProt: Q06528

Downloads

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