ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5f1qA1 - ECOD Domain | ECOD

ECOD/Domains/e5f1qA1

e5f1qA1

UID: 001720735

PDB

Range: A:29-43,A:185-289,A:507-535
PDB: 5F1Q chain A(all domains)
UniProt: A0A0H2YM47 (all domains)
Gene: YPN_3652

Molecule: Periplasmic dipeptide transport protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_5(7523.1.1.3)

Ligands

in contact, ≤ 4 Å

GlutamineGLN

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 5F1Q RCSB PDB: 5F1Q PDBe: 5F1Q UniProt: A0A0H2YM47

Downloads

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