ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5f1qB3 - ECOD Domain | ECOD

ECOD/Domains/e5f1qB3

e5f1qB3

UID: 001720740

PDB

Range: B:44-184
PDB: 5F1Q chain B(all domains)
UniProt: A0A0H2YM47 (all domains)
Gene: YPN_3652

Molecule: Periplasmic dipeptide transport protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupOligo-peptide binding protein (OPPA) insertion domain(304.136)

TT-groupOligo-peptide binding protein (OPPA) insertion domain(304.136.1)

FFamilySBP_bac_5(304.136.1.1)

Ligands

in contact, ≤ 4 Å

L-GlutamineGLN
drugDrugBank DB00130

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 5F1Q RCSB PDB: 5F1Q PDBe: 5F1Q UniProt: A0A0H2YM47

Downloads

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