ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5cymB3 - ECOD Domain | ECOD

ECOD/Domains/e5cymB3

e5cymB3

UID: 001721761

PDB

Range: B:235-312
PDB: 5CYM chain B(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: HIV-1 reverse transcriptase, p51 subunit

3D Structure

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Related Domains

Browse other domains in RVT_thumb →

Classification

AArchitecturealpha bundles(a.7)

XX-grouphelical bundle domain in reverse transcriptase-like polymerases(4967)

HH-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1)

TT-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1.1)

FFamilyRVT_thumb(4967.1.1.9)

Ligands

in contact, ≤ 4 Å

4-IodopyrazolePYZ
drugDrugBank DB02721

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF06817RVT_thumb

Reverse transcriptase thumb domain

External Links

ECOD PDB View: 5CYM RCSB PDB: 5CYM PDBe: 5CYM UniProt: P03366

Downloads

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