ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5c1bA2 - ECOD Domain | ECOD

ECOD/Domains/e5c1bA2

e5c1bA2

UID: 001723745

PDB

Range: A:649-770
PDB: 5C1B chain A(all domains)
UniProt: P55072 (all domains)
Gene: VCP

Molecule: Transitional endoplasmic reticulum ATPase

3D Structure

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Related Domains

Browse other domains in Vps4_C,AAA_lid_3 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHistone-like(148)

HH-groupHistone-related(148.1)

TT-groupAAA+ ATPase lid domain(148.1.3)

FFamilyVps4_C,AAA_lid_3(148.1.3.6)

Ligands

in contact, ≤ 4 Å

Adenosine 5'-[gamma-thio]triphosphateAGS
drugDrugBank DB02930

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Pfam Families

Vps4 C terminal oligomerisation domain

ClanCL0671AAA_lid

PF17862AAA_lid_3

AAA+ lid domain

ClanCL0671AAA_lid

External Links

ECOD PDB View: 5C1B RCSB PDB: 5C1B PDBe: 5C1B UniProt: P55072

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.