ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5cokB1 - ECOD Domain | ECOD

ECOD/Domains/e5cokB1

e5cokB1

UID: 001723799

PDB

Range: B:1-99
PDB: 5COK chain B(all domains)
UniProt: G0X8E8 (all domains)
Gene: pol

Molecule: HIV-1 protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

(3aS,4S,7aR)-hexahydro-4H-furo[2,3-b]pyran-4-yl[(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamate52U

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 5COK RCSB PDB: 5COK PDBe: 5COK UniProt: G0X8E8

Downloads

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