ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d58A2 - ECOD Domain | ECOD

ECOD/Domains/e5d58A2

e5d58A2

UID: 001723849

PDB

Range: A:210-475
PDB: 5D58 chain A(all domains)
UniProt: Q5M4H8 (all domains)
Gene: dtpT

Molecule: Di-or tripeptide:H+ symporter

3D Structure

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Related Domains

Browse other domains in PTR2 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupMajor facilitator superfamily (MFS) general substrate transporter(5050)

HH-groupMajor facilitator superfamily (MFS) general substrate transporter(5050.1)

TT-groupMajor facilitator superfamily (MFS) general substrate transporter(5050.1.1)

FFamilyPTR2(5050.1.1.2)

Ligands

in contact, ≤ 4 Å

AlanineALA
drugDrugBank DB00160
PhenylalaninePHE
drugDrugBank DB00120
2-(2-{2-[2-(2-{2-[2-(2-Ethoxy-Ethoxy)-Ethoxy]-Ethoxy}-Ethoxy)-Ethoxy]-Ethoxy}-Ethoxy)-Ethanol, Polyethyleneglycol Peg400

Pfam Families

POT family

ClanCL0015MFS

External Links

ECOD PDB View: 5D58 RCSB PDB: 5D58 PDBe: 5D58 UniProt: Q5M4H8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB03556within 5 Å only

(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE78M

Shown in the structure viewer. Drug annotations from DrugDomain.