ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5f9fC3 - ECOD Domain | ECOD

ECOD/Domains/e5f9fC3

e5f9fC3

UID: 001724155

PDB

Range: C:792-922
PDB: 5F9F chain C(all domains)
UniProt: O95786 (all domains)
Gene: RIGI

Molecule: Probable ATP-dependent RNA helicase DDX58

3D Structure

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Related Domains

Browse other domains in RIG-I_C-RD →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupETN0001 domain-like(708)

HH-groupETN0001 domain-like(708.1)

TT-groupMss4-like(708.1.2)

FFamilyRIG-I_C-RD(708.1.2.7)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive ((R,R)-2,3-BUTANEDIOL)

(R,R)-2,3-BUTANEDIOLBU3

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF11648RIG-I_C-RD

C-terminal domain of RIG-I

ClanCL0080Beta-tent

External Links

ECOD PDB View: 5F9F RCSB PDB: 5F9F PDBe: 5F9F UniProt: O95786

Downloads

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