ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5f9fG1 - ECOD Domain | ECOD

ECOD/Domains/e5f9fG1

e5f9fG1

UID: 001724159

PDB

Range: G:240-449,G:720-791
PDB: 5F9F chain G(all domains)
UniProt: O95786 (all domains)
Gene: RIGI

Molecule: Probable ATP-dependent RNA helicase DDX58

3D Structure

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Related Domains

Browse other domains in DEAD →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyDEAD(2004.1.1.29)

Ligands

in contact, ≤ 4 Å

TrifluoroethanolETF
drugDrugBank DB03226

+ 1 additive ((R,R)-2,3-BUTANEDIOL)

(R,R)-2,3-BUTANEDIOLBU3

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

DEAD/DEAH box helicase

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5F9F RCSB PDB: 5F9F PDBe: 5F9F UniProt: O95786

Downloads

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