ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5fpvH1 - ECOD Domain | ECOD

ECOD/Domains/e5fpvH1

e5fpvH1

UID: 001724289

PDB

Range: H:9-356
PDB: 5FPV chain H(all domains)
UniProt: O75164 (all domains)
Gene: KDM4A

Molecule: LYSINE-SPECIFIC DEMETHYLASE 4A

3D Structure

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Related Domains

Browse other domains in JmjC,JmjN →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC,JmjN(10.12.1.10)

Ligands

in contact, ≤ 4 Å

2-{[(2-{[(E)-2-(dimethylamino)ethenyl](ethyl)amino}-2-oxoethyl)amino]methyl}pyridine-4-carboxylic acidMMK
MANGANESE (II) IONMN
metal
NICKEL (II) IONNI

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

jmjN domain

ClanCL0029Cupin

External Links

ECOD PDB View: 5FPV RCSB PDB: 5FPV PDBe: 5FPV UniProt: O75164

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Zinc ionZN

metal

Shown in the structure viewer. Drug annotations from DrugDomain.