ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4xlhA1 - ECOD Domain | ECOD

ECOD/Domains/e4xlhA1

e4xlhA1

UID: 001725734

PDB

Range: A:111-628
PDB: 4XLH chain A(all domains)
UniProt: Q9AYY6 (all domains)
Gene: 9

Molecule: Tail spike protein

3D Structure

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Related Domains

Browse other domains in Phage_spike_2 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyPhage_spike_2(207.2.1.27)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 2 additives (Tromethamine, Formic acid)

TromethamineTRS
DrugBank DB03754
Formic acidFMT

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF18781Phage_spike_2

Phage spike trimer

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 4XLH RCSB PDB: 4XLH PDBe: 4XLH UniProt: Q9AYY6

Downloads

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