ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4xymD1 - ECOD Domain | ECOD

ECOD/Domains/e4xymD1

e4xymD1

UID: 001731413

PDB

Range: D:2-230
PDB: 4XYM chain D(all domains)
UniProt: B1L7P8 (all domains)
Gene: Kcr_0115

Molecule: beta subunit of Acyl-CoA synthetase (NDP forming)

3D Structure

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Related Domains

Browse other domains in ATP-grasp_5 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyATP-grasp_5(206.1.3.26)

Ligands

in contact, ≤ 4 Å

Adenosine 5'-methylenediphosphateA12
drugDrugBank DB03148
Calcium ionCA
metal
Sodium ion

Pfam Families

PF13549ATP-grasp_5

ATP-grasp domain

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 4XYM RCSB PDB: 4XYM PDBe: 4XYM UniProt: B1L7P8

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.