ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5fiaB2 - ECOD Domain | ECOD

ECOD/Domains/e5fiaB2

e5fiaB2

UID: 001731871

PDB

Range: B:0-167
PDB: 5FIA chain B(all domains)
UniProt: Q5ZXU7 (all domains)
Gene: lpg0634

Molecule: LpiR1

3D Structure

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Related Domains

Browse other domains in SoDot-IcmSS →

Classification

AArchitecturealpha bundles(a.7)

XX-groupUncharacterized protein lpg1851(3848)

HH-groupUncharacterized protein lpg1851(3848.1)

TT-groupUncharacterized protein lpg1851(3848.1.1)

FFamilySoDot-IcmSS(3848.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, (4r)-2-Methylpentane-2,4-Diol)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814
(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer.

Pfam Families

PF16848SoDot-IcmSS

Substrate of the Dot/Icm secretion system, putative

External Links

ECOD PDB View: 5FIA RCSB PDB: 5FIA PDBe: 5FIA UniProt: Q5ZXU7

Downloads

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Drug annotations from DrugDomain.