ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5fm6A3 - ECOD Domain | ECOD

ECOD/Domains/e5fm6A3

e5fm6A3

UID: 001733964

PDB

Range: A:3-125,A:237-368
PDB: 5FM6 chain A(all domains)
UniProt: G0RYI5 (all domains)
Gene: CTHT_0006820

Molecule: RVB1

3D Structure

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Related Domains

Browse other domains in TIP49 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilyTIP49(2.1.1.32)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523within 5 Å only

Pfam Families

TIP49 P-loop domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5FM6 RCSB PDB: 5FM6 PDBe: 5FM6 UniProt: G0RYI5

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.