ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rgpA2 - ECOD Domain | ECOD

ECOD/Domains/e4rgpA2

e4rgpA2

UID: 001734347

RepresentativePDB

Range: A:73-235
PDB: 4RGP chain A(all domains)
UniProt: Q8DTU7 (all domains)
Gene: SMU_1226c

Molecule: Csm6_III-A

3D Structure

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Related Domains

Browse other domains in Cas_Csm6_HEPN →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFour-helical up-and-down bundle(601)

HH-groupHEPN(601.7)

TT-groupNucleotidyltransferase substrate binding subunit/domain(601.7.1)

FFamilyCas_Csm6_HEPN(601.7.1.8)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 1 additive (Triethylene glycol)

Triethylene glycolPGE
DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF09659Cas_Csm6_HEPN

Cas_Csm6 HEPN domain

ClanCL0291KNTase_C

External Links

ECOD PDB View: 4RGP RCSB PDB: 4RGP PDBe: 4RGP UniProt: Q8DTU7

Downloads

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