ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5fgkA1 - ECOD Domain | ECOD

ECOD/Domains/e5fgkA1

e5fgkA1

UID: 001735064

PDB

Range: A:1-362
PDB: 5FGK chain A(all domains)
UniProt: P49336 (all domains)
Gene: CDK8

Molecule: Cyclin-dependent kinase 8

3D Structure

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Related Domains

Browse other domains in Pkinase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupProtein kinase(206.1.1)

FFamilyPkinase(206.1.1.1)

Ligands

in contact, ≤ 4 Å

8-[3-(3-azanyl-2~{H}-indazol-6-yl)-5-chloranyl-pyridin-4-yl]-2,8-diazaspiro[4.5]decan-1-one5XG

+ 3 additives (Dimethyl sulfoxide, Formic acid, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS
DrugBank DB01093
Formic acid

Pfam Families

PF00069Pkinase

Protein kinase domain

ClanCL0016PKinase

External Links

ECOD PDB View: 5FGK RCSB PDB: 5FGK PDBe: 5FGK UniProt: P49336

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01942

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.