ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4s37K1 - ECOD Domain | ECOD

ECOD/Domains/e4s37K1

e4s37K1

UID: 001735889

PDB

Range: K:2-90
PDB: 4S37 chain K(all domains)
UniProt: Q9S581 (all domains)
Gene: VR2

Molecule: Phage baseplate protein

3D Structure

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Related Domains

Browse other domains in Phage_base_V →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupTail-associated lysozyme gp5-N(2.7)

TT-groupTail-associated lysozyme gp5-N(2.7.1)

FFamilyPhage_base_V(2.7.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Calcium ionCA
metalwithin 5 Å only

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4

Pfam Families

PF04717Phage_base_V

Type VI secretion system/phage-baseplate injector OB domain

ClanCL0021OB

External Links

ECOD PDB View: 4S37 RCSB PDB: 4S37 PDBe: 4S37 UniProt: Q9S581

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.