ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5emiA1 - ECOD Domain | ECOD

ECOD/Domains/e5emiA1

e5emiA1

UID: 001736724

PDB

Range: A:435-614
PDB: 5EMI chain A(all domains)
UniProt: B2J2S4 (all domains)
Gene: Npun_F1846

Molecule: Cell wall hydrolase/autolysin

3D Structure

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Related Domains

Browse other domains in Amidase_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupZn-dependent exopeptidases(2011.1)

TT-groupZn-dependent exopeptidases(2011.1.1)

FFamilyAmidase_3(2011.1.1.5)

Ligands

in contact, ≤ 4 Å

(4R)-2-METHYLPENTANE-2,4-DIOLMRD
Zinc ionZN
metal

+ 1 additive (2-(N-morpholino)ethanesulfonic acid)

2-(N-morpholino)ethanesulfonic acidMES

Pfam Families

PF01520Amidase_3

N-acetylmuramoyl-L-alanine amidase

ClanCL0865ZnExoPePases

External Links

ECOD PDB View: 5EMI RCSB PDB: 5EMI PDBe: 5EMI UniProt: B2J2S4

Downloads

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DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.