ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1gl4B1 - ECOD Domain | ECOD

ECOD/Domains/e1gl4B1

e1gl4B1

UID: 000001737

RepresentativePDB

Range: B:1769-1857
PDB: 1GL4 chain B(all domains)
UniProt: Q05793 (all domains)
Gene: Hspg2

Molecule: BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN

3D Structure

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Related Domains

Browse other domains in Ig_3 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyIg_3(11.1.1.179)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (HEPES)

HEPESEPE
DrugBank DB16872

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Immunoglobulin domain

ClanCL0159E-set

External Links

ECOD PDB View: 1GL4 RCSB PDB: 1GL4 PDBe: 1GL4 UniProt: Q05793

Downloads

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