ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5ebbA1 - ECOD Domain | ECOD

ECOD/Domains/e5ebbA1

e5ebbA1

UID: 001737413

PDB

Range: A:34-443
PDB: 5EBB chain A(all domains)
UniProt: Q92484 (all domains)
Gene: SMPDL3A

Molecule: Acid sphingomyelinase-like phosphodiesterase 3a

3D Structure

Loading viewer...

Related Domains

Browse other domains in Metallophos,ASMase_C →

Classification

AArchitecturea+b four layers(a.13)

XX-groupCarbon-nitrogen hydrolase-like(246)

HH-groupMetallo-dependent phosphatases(246.2)

TT-groupMetallo-dependent phosphatases(246.2.1)

FFamilyMetallophos,ASMase_C(246.2.1.5)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Zinc ionZN
metal

+ 1 additive (Malonate Ion)

Pfam Families

PF00149Metallophos

Calcineurin-like phosphoesterase

ClanCL0163Calcineurin

PF19272ASMase_C

Acid sphingomyelin phosphodiesterase C-terminal region

External Links

ECOD PDB View: 5EBB RCSB PDB: 5EBB PDBe: 5EBB UniProt: Q92484

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Malonate IonMLI

DrugBank DB02201

Shown in the structure viewer. Drug annotations from DrugDomain.