ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ebbC1 - ECOD Domain | ECOD

ECOD/Domains/e5ebbC1

e5ebbC1

UID: 001746313

PDB

Range: C:34-443
PDB: 5EBB chain C(all domains)
UniProt: Q92484 (all domains)
Gene: SMPDL3A

Molecule: Acid sphingomyelinase-like phosphodiesterase 3a

3D Structure

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Related Domains

Browse other domains in Metallophos,ASMase_C →

Classification

AArchitecturea+b four layers(a.13)

XX-groupCarbon-nitrogen hydrolase-like(246)

HH-groupMetallo-dependent phosphatases(246.2)

TT-groupMetallo-dependent phosphatases(246.2.1)

FFamilyMetallophos,ASMase_C(246.2.1.5)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Zinc ionZN
metal

+ 2 additives (Glycerin, Malonate Ion)

Pfam Families

PF00149Metallophos

Calcineurin-like phosphoesterase

ClanCL0163Calcineurin

PF19272ASMase_C

Acid sphingomyelin phosphodiesterase C-terminal region

External Links

ECOD PDB View: 5EBB RCSB PDB: 5EBB PDBe: 5EBB UniProt: Q92484

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Malonate IonMLI

DrugBank DB02201

Shown in the structure viewer. Drug annotations from DrugDomain.