ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ae4A1 - ECOD Domain | ECOD

ECOD/Domains/e4ae4A1

e4ae4A1

UID: 001755720

PDB

Range: A:459-499
PDB: 4AE4 chain A(all domains)
UniProt: Q9NZ09 (all domains)
Gene: UBAP1

Molecule: UBIQUITIN-ASSOCIATED PROTEIN 1

3D Structure

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Related Domains

Browse other domains in UBAP-1_UBA2 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupRuvA-C(103)

HH-groupRuvA-C, UBA, CRAL/TRIO-N, HBS1(103.1)

TT-groupUBA-like domain(103.1.1)

FFamilyUBAP-1_UBA2(103.1.1.23)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metalwithin 5 Å only

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462within 5 Å only

Shown in the structure viewer.

Pfam Families

PF21267UBA2_UBAP-1

Ubiquitin-associated protein 1, UBA2 domain

ClanCL0214UBA

External Links

ECOD PDB View: 4AE4 RCSB PDB: 4AE4 PDBe: 4AE4 UniProt: Q9NZ09

Downloads

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Drug annotations from DrugDomain.