ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4e36A3 - ECOD Domain | ECOD

ECOD/Domains/e4e36A3

e4e36A3

UID: 001758732

PDB

Range: A:271-501,A:529-546
PDB: 4E36 chain A(all domains)
UniProt: Q6P179 (all domains)
Gene: ERAP2

Molecule: Endoplasmic reticulum aminopeptidase 2

3D Structure

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Related Domains

Browse other domains in Peptidase_M1 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M1(2498.1.1.9)

Ligands

in contact, ≤ 4 Å

LysineLYS
drugDrugBank DB00123
N-AcetylglucosamineNAG
drugDrugBank DB00141
Zinc ion

Pfam Families

PF01433Peptidase_M1

Peptidase family M1 domain

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 4E36 RCSB PDB: 4E36 PDBe: 4E36 UniProt: Q6P179

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (2-(N-morpholino)ethanesulfonic acid)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.