ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5c0oH1 - ECOD Domain | ECOD

ECOD/Domains/e5c0oH1

e5c0oH1

UID: 001758778

PDB

Range: H:62-254
PDB: 5C0O chain H(all domains)
UniProt: Q8GBB2 (all domains)
Gene: trmI

Molecule: tRNA (adenine(58)-N(1))-methyltransferase TrmI

3D Structure

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Related Domains

Browse other domains in GCD14 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyGCD14(2003.1.5.69)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

tRNA methyltransferase complex GCD14 subunit

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5C0O RCSB PDB: 5C0O PDBe: 5C0O UniProt: Q8GBB2

Downloads

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Drug annotations from DrugDomain.