ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4pexB1 - ECOD Domain | ECOD

ECOD/Domains/e4pexB1

e4pexB1

UID: 001758792

PDB

Range: B:293-605
PDB: 4PEX chain B(all domains)
UniProt: G2NFJ9 (all domains)
Gene: SACTE_4363

Molecule: Putative secreted protein

3D Structure

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Related Domains

Browse other domains in LAM55_pectate-like →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyLAM55_pectate-like(207.2.1.67)

Ligands

in contact, ≤ 4 Å

Beta-D-GlucoseBGC
drugDrugBank DB02379

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF27525LAM55_pectate-like

LAM55 pectate lyase-like domain

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 4PEX RCSB PDB: 4PEX PDBe: 4PEX UniProt: G2NFJ9

Downloads

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