ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ezmA1 - ECOD Domain | ECOD

ECOD/Domains/e5ezmA1

e5ezmA1

UID: 001759954

RepresentativePDB

Range: A:25-463
PDB: 5EZM chain A(all domains)
UniProt: Q1LDT6 (all domains)
Gene: Rmet_4828

Molecule: 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferases of PMT family

3D Structure

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Related Domains

Browse other domains in PMT_2 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupSTT3/PglB/AglB transmembrane domain(3352)

HH-groupSTT3/PglB/AglB transmembrane domain(3352.1)

TT-groupSTT3/PglB/AglB transmembrane domain(3352.1.1)

FFamilyPMT_2(3352.1.1.2)

Ligands

in contact, ≤ 4 Å

[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoateMPG
drugDrugBank DB03831
N,N,N-Trimethyl-2-(phosphonooxy)ethanaminiumPC
drugDrugBank DB03945

Pfam Families

Dolichyl-phosphate-mannose-protein mannosyltransferase

ClanCL0111GT-C

External Links

ECOD PDB View: 5EZM RCSB PDB: 5EZM PDBe: 5EZM UniProt: Q1LDT6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Chloride ionCL

Mono-trans, octa-cis decaprenyl-phosphateDSL

Zinc ionZN

metal

+ 2 additives (HEPES, Phosphate ion)

HEPESEPE
DrugBank DB16872
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.