ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4kqrA4 - ECOD Domain | ECOD

ECOD/Domains/e4kqrA4

e4kqrA4

UID: 001761023

PDB

Range: A:223-290,A:412-570
PDB: 4KQR chain A(all domains)
UniProt: G3XD46 (all domains)
Gene: ftsI

Molecule: Penicillin-binding protein 3

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
(2S,4S)-2-[(R)-carboxy{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acidVPP

+ 2 additives (Glycerin, Imidazole)

GlycerinGOL

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 4KQR RCSB PDB: 4KQR PDBe: 4KQR UniProt: G3XD46

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

ImidazoleIMD

DrugBank DB03366within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.