ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3m6kB2 - ECOD Domain | ECOD

ECOD/Domains/e3m6kB2

e3m6kB2

UID: 001761240

PDB

Range: B:294-374
PDB: 3M6K chain B(all domains)
UniProt: Q977W1 (all domains)
Gene: top5

Molecule: Topoisomerase V

3D Structure

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Related Domains

Browse other domains in Topoisomerase V, second (HhH)2 tandem domain / SAM domain-like →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHhH/H2TH(102)

HH-groupSAM/DNA-glycosylase(102.1)

TT-groupSAM domain-like(102.1.1)

FFamilyTopoisomerase V, second (HhH)2 tandem domain / SAM domain-like(102.1.1.44)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF21616Topo-V_HhH_2_2nd

Topoisomerase V, second (HhH)2 tandem domain

ClanCL0198HHH

SAM domain-like

ClanCL0003SAM

External Links

ECOD PDB View: 3M6K RCSB PDB: 3M6K PDBe: 3M6K UniProt: Q977W1

Downloads

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