ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4n25A2 - ECOD Domain | ECOD

ECOD/Domains/e4n25A2

e4n25A2

UID: 001761332

PDB

Range: A:295-665
PDB: 4N25 chain A(all domains)
UniProt: Q9Y2J8 (all domains)
Gene: PADI2

Molecule: Protein-arginine deiminase type-2

3D Structure

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Related Domains

Browse other domains in PAD →

Classification

AArchitecturea+b duplicates or obligate multimers(a.15)

XX-groupPentein(232)

HH-groupPentein(232.1)

TT-groupPentein(232.1.1)

FFamilyPAD(232.1.1.3)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 2 additives (Acetate, (4r)-2-Methylpentane-2,4-Diol)

AcetateACT

Pfam Families

Protein-arginine deiminase (PAD)

ClanCL0197GME

External Links

ECOD PDB View: 4N25 RCSB PDB: 4N25 PDBe: 4N25 UniProt: Q9Y2J8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

(4r)-2-Methylpentane-2,4-DiolMPD

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.